plotPieCluster {flowSpy} | R Documentation

## Visualization pie plot of cluster data of FSPY

### Description

Visualization pie plot of cluster data of FSPY

### Usage

    plotPieCluster(
      object,
      item.use = c("PC_1", "PC_2"),
      cex.size = 1,
      size.by.cell.number = TRUE,
      main = "2D pie plot of FSPY",
      plot.theme = theme_bw()
    )

### Arguments

`object` | An FSPY object
`item.use` | character. Items use to 2D plot, axes x and y must be numeric.
`cex.size` | numeric. Size of the dot
`size.by.cell.number` | logical. Whether to show size of cell number.
`main` | character. Title of the plot.
`plot.theme` | themes from `ggplot2`

### Value

ggplot2 figure

### Examples

    if (FALSE) {
    # Runs only have more than two stages
    plotPieCluster(fspy, cex.size = 0.5)

    plotPieCluster(fspy, item.use = c("PC_1", "PC_2"), cex.size = 0.5)
    plotPieCluster(fspy, item.use = c("PC_2", "PC_3"), cex.size = 0.5)

    plotPieCluster(fspy, item.use = c("tSNE_1", "tSNE_2"), cex.size = 20)

    plotPieCluster(fspy, item.use = c("DC_1", "DC_2"), cex.size = 0.5)

    plotPieCluster(fspy, item.use = c("UMAP_1", "UMAP_2"), cex.size = 1)
    plotPieCluster(fspy, item.use = c("UMAP_1", "UMAP_2"), cex.size = 1) +
       scale_fill_manual(values = c("#00599F","#FF3222","#009900",
                                    "#FF9933","#FF99FF","#7A06A0"))
    }

[Package flowSpy version 1.0.4 Index]