CellPopulation-class {flowDensity} | R Documentation

## Class `"CellPopulation"`

### Description

This class represents the output of 'flowDensity(.)' function from flowDensity package.

### Objects from the Class

Objects can be created by calls of the form `new("CellPopulation", ...)`.

### Slots

`flow.frame`:

  Object of class `"flowFrame"` representing the flow cytometry data of the cell population

`proportion`:

  Object of class `"numeric"` representing proportion of the cell population with respect to its parent cell population

`cell.count`:

  Object of class `"numeric"` representing cell count of the cell population

`channels`:

  Object of class `"character"` representing channel names corresponding to the 2 dimensions where the cell population is extracted

`position`:

  Object of class `"logical"` representing position of the cell population in the 2-dimensional space

`gates`:

  Object of class `"numeric"` representing thresholds on each channel used to gate the cell population

`filter`:

  Object of class `"matrix"` representing boundary of the cell population using a convex polygon

`index`:

  Object of class `"numeric"` representing indices of the data points in the cell population with respect to its parent cell population

### Methods

flowDensity

  `signature(obj = "CellPopulation", channels = "ANY", position = "logical", singlet.gate = "missing")`: ...

flowDensity

  `signature(obj = "CellPopulation", channels = "missing", position = "missing", singlet.gate = "logical")`: ...

getflowFrame

  `signature(obj = "CellPopulation")`: ...

plot

  `signature(x = "flowFrame", y = "CellPopulation")`: ...

### Author(s)

Jafar Taghiyar <email: <jtaghiyar@bccrc.ca>>

### Examples

    showClass("CellPopulation")

[Package flowDensity version 1.20.0 Index]