fCI-class {fCI} | R Documentation

## Class `"fCI"`

### Description

The main Class that defines the slots values

### Objects from the Class

Objects can be created by calls of the form `new("fCI", ...)`.

### Slots

`sample.data.file`:

  Object of class `"character"` ~~

`distance.matrix`:

  Object of class `"matrix"` ~~

`sample.data.normalized`:

  Object of class `"data.frame"` ~~

`attr.info`:

  Object of class `"data.frame"` ~~

`null.data.start`:

  Object of class `"matrix"` ~~

`diff.data.start`:

  Object of class `"matrix"` ~~

`expr.by.fold`:

  Object of class `"matrix"` ~~

`fold.cutoff.list`:

  Object of class `"list"` ~~

`rank.index.to.be.removed`:

  Object of class `"list"` ~~

`diff.gene.ids`:

  Object of class `"list"` ~~

`wt.index`:

  Object of class `"numeric"` ~~

`df.index`:

  Object of class `"numeric"` ~~

`ctr.indexes`:

  Object of class `"numeric"` ~~

`trt.indexes`:

  Object of class `"numeric"` ~~

`method.option`:

  Object of class `"numeric"` ~~

`use.ratio`:

  Object of class `"logical"` ~~

`percent.genes.to.scan`:

  Object of class `"numeric"` ~~

`num.genes.to.skip.each`:

  Object of class `"numeric"` ~~

`use.fold.change`:

  Object of class `"logical"` ~~

`wt.comb`:

  Object of class `"list"` ~~

`df.comb`:

  Object of class `"list"` ~~

`diff.ids`:

  Object of class `"list"` ~~

`result`:

  Object of class `"numeric"` ~~

`indexes.reconsidered`:

  Object of class `"numeric"` ~~

`center.by.gaussian.kernel`:

  Object of class `"logical"` ~~

`symmetric.fold`:

  Object of class `"logical"` ~~

`pairwise.diff.gene.ids`:

  Object of class `"list"` ~~

### Methods

No methods defined with class "fCI" in the signature.

### Note

TBD

### Author(s)

Shaojun Tang

### References

http://software.steenlab.org/fCI/

### See Also

TBD

### Examples

    showClass("fCI")

[Package fCI version 1.16.0 Index]