314152491f48a20bc3b848c1ab519f0e *DESCRIPTION
d7dd42afa6971158a0bad855c734b8fd *INDEX
1653fc3664110e43c663045e6498c973 *LICENSE
45f935a9e985f9aae7cca78b638c4d6d *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
3c4fc0af5054081c1411691f680bb8ba *Meta/hsearch.rds
4db3055f774da497e69193e43a666967 *Meta/links.rds
a1fd414d05e791480977e2d1e8bd87f6 *Meta/nsInfo.rds
cb6d8e2160092bddf09878cc052a6fa0 *Meta/package.rds
b8ad52919366df36d6fbba93fb10c1ad *Meta/vignette.rds
52b21df8aad348daced3ef4ec1acc057 *NAMESPACE
51a5a36e746bec256ba0b5f032bc47d6 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/diffloop
d6ccdae72a8793aeb1a11fbeb0d6af04 *R/diffloop.rdb
7cf420b98d01d05311cfe41eb2cbbdfe *R/diffloop.rdx
a3b4104706c2eafec76cf6ad5464479a *doc/diffloop.R
2e0bff835a901ee4a580544f2d2e5fb4 *doc/diffloop.Rmd
2b6fc2d11a3301ac3aaec9471faad899 *doc/diffloop.html
ece60c36e19aedb88620f62b22319b8b *doc/index.html
1c11ae01a05c606208638891bc41f31d *extdata/Jurkat_CTCF_chr1.narrowPeak
7737a1fb81a379fc22eaa0a3c6f3fb1c *extdata/Jurkat_H3K27ac_chr1.narrowPeak
35984534f4283ff3a1a01354509180db *extdata/chr1-TSS.bed
c2fd58e244061432c331cedc6b601c0c *help/AnIndex
9b9655e00a85160ca680ce87ecc4fab8 *help/aliases.rds
7edf8aac839293339434d22c193c3553 *help/diffloop.rdb
8678e32f52ddbb1c0eaaf19c37f25a45 *help/diffloop.rdx
cd68ae363d7e971486c146a5a5ac7405 *help/paths.rds
d6919771ca0fa6a95d47ad235e205bcf *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2e9ea9d765a831482c94e66e1c5c8067 *html/addchr.html
89830663520fca2bcbdf938495d0a6f2 *html/annotateAnchors.bed.html
3e8387af5cca3749cd370e829c999396 *html/annotateAnchors.bigwig.html
4410dd7bdbdb7dda7a95d7b564ab3b21 *html/annotateAnchors.html
583fd53b6dd393a6b2d956fcae86a6dd *html/annotateLoops.dge.html
a7c2b4bddab949c9b9b44ec37f383a11 *html/annotateLoops.html
456fd1b16d68220d34da218acd4eb7ed *html/bedToGRanges.html
854819fc1baf06923f09f619083b3951 *html/calcLDSizeFactors.html
5b2cdda169fd9f7d2118ba2d32264fc6 *html/callCCDs.html
165bde7ce6a32a54fa06997e7f11cfa8 *html/computeBoundaryScores.html
76ab93b0f1b7cf6a284a55459bda4ea5 *html/diffloop.html
3d73556f1c2be3d80be4e29240c021d4 *html/dim-loops-method.html
f387e74f594a8fda03cfb3943bb30ee0 *html/featureTest.html
2077a10b86c5abaa8f37bcc0ca50438a *html/filterLoops.html
b1e4b6b90fca31686ece92898585aaa4 *html/filterSpanningLoops.html
9eb0aa937854beca159d67632e963dcb *html/geneinfo.html
99a74989f7b22f9d5b5d9273a381429b *html/getHumanGenes.html
2624963fcc68b74e914e51c1ce046314 *html/getHumanTSS.html
4b00de9bc3823f2548a32ab35f664b5c *html/getMouseGenes.html
42f8d6a41f38027bc690e8c54c663696 *html/getMouseTSS.html
f502e2b8ecd154e02afa7f1bfb517241 *html/head-loops-method.html
25be70a4a47835ddf18e4ef6b1c44637 *html/human.genes.html
de64aabeb4fb55b2469223731db6bef4 *html/interchromosomal.html
849a49cbcf0849c67e0afa39e094c243 *html/intrachromosomal.html
dee8805c3878d47c2e457505d8b2051e *html/keepCTCFloops.html
ba4ff52f82ab1b61c2dcf61f0424fedf *html/keepEPloops.html
c8650254e886aff9f8f697a6324d9483 *html/loopAssoc.html
84bd3e971459ec8479f3c4d259cb22a2 *html/loopDistancePlot.html
10ee0458ae2e4178b9fcca3bee0f3dec *html/loopGenes.html
8ea2414d2e06df9850cb677ffa1dc253 *html/loopMetrics.html
61e3e3903bd5634e65ea6d3d3fe42e51 *html/loopPlot.html
98f114b19f008cec533f7d04eadbb59d *html/loopWidth.html
14352ad20c90d6051673409cedc03283 *html/loops-class.html
fc977d23ece0b8c26cec1a3bfd9683b8 *html/loops.small.html
49e22d6c999be4bd19b7a15dd54efb9f *html/loopsMake.html
baedfbba206eaac2848c95f889ebe0c6 *html/loopsMake.mango.html
11d20dd5a3062635a8f9877f47dfba6e *html/loopsSubset.html
35aa43338b6058a91063d9e2fe661e2e *html/mangoCorrection.html
3230bfe9922f47e13afe44f4644f35e5 *html/manyLoopPlots.html
6beec6d33e1cbb155d3f03d04ba6934d *html/mergeAnchors.html
22715d1eb33a33fb01b34b980bd0bb34 *html/numAnchors.html
e521c3b3cc3678b990e8327d7e565f85 *html/numLoops.html
904ef83e112f2f87b59ca13a2d9d02ac *html/padGRanges.html
21bfd1bcb830b30a3304dda851278305 *html/pcaPlot.html
46dba9526438e92e6aa82455e2fb3fe5 *html/plotTopLoops.html
1d90434d2de146f737011a329ba063fc *html/quickAssoc.html
c98db19fceefd3a91f9c96e670db24a1 *html/quickAssocVoom.html
c853be8e092511b0d5ec38f2ed2f1eec *html/removeRegion.html
d82391329cf74083a6b56caf7401cab3 *html/removeSelfLoops.html
aa706eebd5207612bf9c7a0eb2a5664d *html/rmchr.html
f1e1caa267859d01edd763f3d72c5f80 *html/sampleNames-loops-method.html
b7ce6217e51c26667d691c84babb5a57 *html/slidingWindowTest.html
64d48477bd04f8840636b7f19703d747 *html/splitSamples.html
e41f4dda0db54c203d30a9fb72231315 *html/sub-loops-numeric-numeric-missing-method.html
71c5b81a5fe1ad73af1c2c0ef92f0cb6 *html/subsetLoops.html
61077c272111329f0aade5e00cb2aa04 *html/subsetRegion.html
692f721d6a0ac1aa2479662c6c4010f2 *html/subsetRegionAB.html
8dc526895f3c7b58089228c4f1234691 *html/summary-loops-method.html
176dc8538d73aee89faf96813fa50d6a *html/tail-loops-method.html
ae0a7ae1b8475a4afc53acee968c631c *html/topLoops.html
11c9f67ca55a2bbe034cd36ee43fdb9b *html/union-loops-loops-method.html
dd879d9f5f78f9f702b9915881f8a6d5 *html/updateLDGroups.html
6370ea6d3fc8c60dbcf64eafd772adb6 *rda/geneinfo.h.rda
4b562a7016e48faaf91beeb7b58cb69a *rda/geneinfo.m.rda
33463d38feec70a2fc5af7278e04d08f *rda/human.genes.rda
b9f6ff4264da38f328006f920d4c40b3 *rda/loops.small.rda
