# Vignettes and other documentation

## Vignettes from package 'destiny'

destiny::DPT |  | destiny 2.0 brought the Diffusion Pseudo Time (DPT) class | PDF | source | R code
destiny::Diffusion-Map-recap |  | Reproduce the Diffusion Map vignette with the supplied data() | PDF | source | R code
destiny::Diffusion-Maps |  | destiny main vignette: Start here! | PDF | source | R code
destiny::Gene-Relevance |  | detecting relevant genes with destiny 3 | PDF | source | R code
destiny::Global-Sigma |  | The effects of a global vs. local kernel | PDF | source | R code
destiny::tidyverse |  | tidyverse and ggplot integration with destiny | PDF | source | R code

## Other files in the doc directory

| DPT.ipynb
| Diffusion-Map-recap.ipynb
| Diffusion-Maps.ipynb
| Gene-Relevance.ipynb
| Global-Sigma.ipynb
| bibliography.bib
| destiny-base.tplx
| destiny-bib.tplx
| destiny.tplx
| destiny_processors.py
| tidyverse.ipynb