# Generated by roxygen2: do not edit by hand

export(binSummarizedExperiment)
export(downshiftDFtoMatrix)
export(generatePermutation)
export(getDeltaSE)
export(getLopsidedness)
export(getMeanNormalizedCountsSE)
export(getNormalizedCountsSE)
export(getOverlapWeights)
export(getPValueCutoff)
export(getRunAndLopsidednessStatistics)
export(getRunStatisticsDist)
export(getRunTotals)
export(getSignificantRegions)
export(getSizeFactorsDF)
export(getSizeFactorsSE)
export(plotSignificantRegions)
export(rebinToMultiple)
importFrom(DESeq2,estimateSizeFactorsForMatrix)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,intersect)
importFrom(GenomicRanges,isDisjoint)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,width)
importFrom(IRanges,IRanges)
importFrom(IRanges,findOverlaps)
importFrom(IRanges,from)
importFrom(IRanges,ranges)
importFrom(IRanges,to)
importFrom(IRanges,width)
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"mcols<-")
importFrom(SummarizedExperiment,"rowRanges<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,end)
importFrom(SummarizedExperiment,ranges)
importFrom(SummarizedExperiment,rowRanges)
importFrom(SummarizedExperiment,seqnames)
importFrom(SummarizedExperiment,start)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_discrete_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,xlab)
