getErrors {dada2} | R Documentation

## Extract already computed error rates.

### Description

Extract already computed error rates.

### Usage

    getErrors(obj, detailed = FALSE, enforce = TRUE)

### Arguments

`obj` | (Required). An R object with error rates. Supported objects: dada-class; list of dada-class; numeric matrix; named list with $err_out, $err_in, $trans.
`detailed` | (Optional). Default FALSE. If FALSE, an error rate matrix corresponding to $err_out is returned. If TRUE, a named list with $err_out, $err_in and $trans. $err_in and $trans can be NULL.
`enforce` | (Optional). Default TRUE. If TRUE, will check validity of $err_out and error if invalid or NULL.

### Value

A numeric matrix of error rates. Or, if detailed=TRUE, a named list with $err_out, $err_in and $trans.

### Examples

     fl1 <- system.file("extdata", "sam1F.fastq.gz", package="dada2")
     drp <- derepFastq(fl1)
     dd <- dada(drp, err=NULL, selfConsist=TRUE)
     err <- getErrors(dd)

[Package dada2 version 1.14.1 Index]