CuffFeature-class {cummeRbund} | R Documentation

## Class "CuffFeature"

### Description

A 'data' container class for all FPKM, annotation, and differential expression data for a single feature (gene, isoform, TSS, or CDS).

### Objects from the Class

Objects can be created by calls of the form `new("CuffFeature", annotation, fpkm, diff, ...)`.

### Slots

`annotation`:

  Object of class `"data.frame"` ~~

`fpkm`:

  Object of class `"data.frame"` ~~

`diff`:

  Object of class `"data.frame"` ~~

`repFpkm`:

  Object of class `"data.frame"` ~~

`count`:

  Object of class `"data.frame"` ~~

`genome`:

  Object of class `"character"` ~~

### Methods

fpkmMatrix

  `signature(object="CuffFeature")`: ...

repFpkmMatrix

  `signature(object = "CuffFeature")`: ...

length

  `signature(x = "CuffFeature")`: ...

### Accessors

annotation

  `signature(object="CuffFeature")`: Access @annotation slot

diffData

  `signature(object="CuffFeature")`: Access @diff slot

samples

  `signature(object="CuffFeature")`: Get vector of samples

### Note

'CuffGene' is a superclass of 'CuffFeature' that links gene information for a given gene with all isoform-, TSS-, and CDS-level data for the given gene.

### Author(s)

Loyal A. Goff

### References

None

### See Also

`CuffGene`

### Examples

    showClass("CuffFeature")

[Package cummeRbund version 2.28.0 Index]