load_raw {crossmeta} | R Documentation

## Load and annotate raw data downloaded from GEO.

### Description

Loads and annotates raw data previously downloaded with `get_raw`. Supported platforms include Affymetrix, Agilent, and Illumina.

### Usage

    load_raw(gse_names, data_dir = getwd(), gpl_dir = "..",
      overwrite = FALSE, ensql = NULL)

### Arguments

`gse_names` | Character vector of GSE names.
`data_dir` | String specifying directory with GSE folders.
`gpl_dir` | String specifying parent directory to search for previously downloaded GPL.soft files.
`overwrite` | Do you want to overwrite saved esets from previous `load_raw`?
`ensql` | For development. Path to sqlite file with ENTREZID and SYMBOL columns created in data-raw/entrezdt.

### Value

List of annotated esets.

### Examples

    library(lydata)
    data_dir <- system.file("extdata", package = "lydata")
    eset <- load_raw("GSE9601", data_dir = data_dir)

[Package crossmeta version 1.12.0 Index]