cola_opt {cola} | R Documentation

## Global Parameters

### Description

Global Parameters

### Usage

    cola_opt(..., RESET = FALSE, READ.ONLY = NULL, LOCAL = FALSE, ADD = FALSE)

### Arguments

`...` | Arguments for the parameters, see "details" section
`RESET` | reset to default values
`READ.ONLY` | please ignore
`LOCAL` | please ignore
`ADD` | please ignore

### Details

There are following global parameters:

`group_diff`

  Used in `get_signatures,ConsensusPartition-method`.

`fdr_cutoff`

  Used in `get_signatures,ConsensusPartition-method`.

`color_set_2`

  Colors for the predicted classes.

### Examples

    cola_opt
    cola_opt$group_diff = 0.2  # e.g. for methylation datasets
    cola_opt$fdr_cutoff = 0.1  # e.g. for methylation datasets
    cola_opt
    cola_opt(RESET = TRUE)

[Package cola version 1.2.1 Index]