heatmap.3 {cogena} | R Documentation

## heatmap.3 An improved heatmap plotting

### Description

The code is from https://github.com/obigriffith/biostar-tutorials/tree/master/Heatmaps

### Usage

    heatmap.3(x, Rowv = TRUE, Colv = if (symm) "Rowv" else TRUE,
      distfun = dist, hclustfun = hclust, dendrogram = c("both", "row",
      "column", "none"), symm = FALSE, scale = c("none", "row", "column"),
      na.rm = TRUE, revC = identical(Colv, "Rowv"), add.expr, breaks,
      symbreaks = max(x < 0, na.rm = TRUE) || scale != "none",
      col = "heat.colors", colsep, rowsep, sepcolor = "white",
      sepwidth = c(0.05, 0.05), cellnote, notecex = 1, notecol = "cyan",
      na.color = par("bg"), trace = c("none", "column", "row", "both"),
      tracecol = "cyan", hline = median(breaks), vline = median(breaks),
      linecol = tracecol, margins = c(4, 2), ColSideColors, RowSideColors,
      side.height.fraction = 0.3, cexRow = 0.2 + 1/log10(nr),
      cexCol = 0.2 + 1/log10(nc), labRow = NULL, labCol = NULL,
      key = TRUE, keysize = 1.5, density.info = c("none", "histogram",
      "density"), denscol = tracecol, symkey = max(x < 0, na.rm = TRUE) ||
      symbreaks, densadj = 0.25, main = NULL, xlab = NULL, ylab = NULL,
      lmat = NULL, lhei = NULL, lwid = NULL, ColSideColorsSize = 1,
      RowSideColorsSize = 1, KeyValueName = "Value", ...)

### Value

a heatmap figure

### Author(s)

Obi Griffith

[Package cogena version 1.20.0 Index]