31c879e362bdf1e1133be2b4387c8f24 *DESCRIPTION
9f2ac2d2dd49d3d9bc3741a904441862 *INDEX
430fc6c660ae15db6519c2e7c2bf7906 *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
beae28faa969a5759b96443a50cdf2df *Meta/hsearch.rds
a7008a832895a9ed39b005f62a8f14d1 *Meta/links.rds
c8ff57ab8fa42ce2e5a4368e389c1623 *Meta/nsInfo.rds
58b52c7701bc3a2dce0bc860cce1dc5b *Meta/package.rds
47d052583db18815b5244a83680ab1f6 *Meta/vignette.rds
7e3da990014f52ce3954dbd8a460f192 *NAMESPACE
dd6be23167e8b793ac67c79c001ad3e7 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/cobindR
6b86810055b92e3bc2c009dc53897ad4 *R/cobindR.rdb
03f110dc80d928074af7eb954dd47e8b *R/cobindR.rdx
ded51f71ec4570726e53717786f79c40 *doc/cobindR.R
496990aaee83d98ebd2a166ebf4593bc *doc/cobindR.Rnw
29a932c8a44d30a853a5720866d59e48 *doc/cobindR.pdf
e7225ab133401680051ebb071580b06b *doc/index.html
39be6d459717859da6cda86dcf79ceb1 *extdata/config_default.yml
11654be8f877d9f1dcf4050a7d6e2046 *extdata/example.fasta
2c46ba771fab025d9caa0c6f5d4ad8ba *extdata/pfms/myod.tfpfm
ee0c1768d0850b04bf7dd4279f23bfff *extdata/pfms/soxoctklf.tfpfm
96a7c45735d76974e4c96bd5ddd4d987 *extdata/sox_oct_example_vignette_seqs.fasta
043b0ae785ff9dd7f9ba9cc6e00866de *extdata/ucsc_example_ItemRGBDemo.bed
48119dc94fcce51bfedadd539ac00b8c *help/AnIndex
d332cb63a05c36a19a750880954be1b3 *help/aliases.rds
c904121001c0376ab2891580d08c9fc1 *help/cobindR.rdb
288cf4755060bf69870f0bc2a20212a1 *help/cobindR.rdx
5982924ff103dda508e949f3a53ed695 *help/paths.rds
f0eb621f917e45b19628bebc637bc096 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
fe314d93d647f2f433b4ae2bb5ef5a98 *html/SeqObj-class.html
2d0190c36229d589412425e2ee0629c3 *html/bg_binding_sites.html
5680bdefd98d944973c7376c770d0303 *html/bg_pairs.html
61e8b13d5785796f5ecefc2170777185 *html/bg_sequence_origin.html
17f50545c658f7e0136387de2d9def77 *html/bg_sequence_source.html
f6276720fdfd099ae5cb61f6cd0043ea *html/bg_sequence_type.html
0515731a30fafbae7a0a8ba5e3538dc9 *html/bg_sequences.html
5aa4e376376c3a078bd560aaedc6cdb8 *html/binding_sites.html
cad1fd7b306d61dc51baf443881af6b8 *html/cobindRConfiguration.html
a014158525825541632d7475ca44610a *html/cobindr-class.html
33c084ae750ddfa9865114dc51181454 *html/cobindr-internal.html
2d1765ce8760a1b5f4c72fe983c1d1c2 *html/cobindr-package.html
89f36ab37783fad7eaaf871a3a43bb09 *html/comment.html
80aad07ce4301c22996f3a6c90a1abfe *html/configuration-class.html
263eccdeb3a41b14651464b6dfc07577 *html/configuration.html
1f214d9fde3f028357f687fc007f4b17 *html/downstream.html
d1e6ce88b14dc0de45efe3d1fbcbc0b3 *html/experiment_description.html
d4d64a2413364c0ff79a1454e504957f *html/fdrThreshold.html
036848240c021910b7706ff6705b88e2 *html/find.pairs.html
70f9e93cd63c36aa31866d838d959479 *html/get.bindingsite.ranges.html
b98eeecb2403c1c8776a5695dfdd9045 *html/get.pairs.html
167663f2fed15b516e5f5956ea1ae318 *html/get.significant.pairs.html
96c9a7d661f2c499667fb2ac950e871a *html/id.html
3394edba44e0614a789a09df7162022e *html/location.html
29b561bedb69041fcc7eb08306427b7e *html/mart.html
1bddd8b0daaecebe09fe81ba627720a6 *html/max_distance.html
bbba794f38d260ce18cc46dc1e4a6ac9 *html/name.html
66f64707c1d5e5ea384565f865e0568f *html/pValue.html
f39da9eeb8617d9545cbd70bbee80bd0 *html/pairs.html
1dd703355a62080eb89ac1e18663e54d *html/pairs_of_interest.html
711d9e1241284d686d6dedb859773b2d *html/path.html
6728184200be03f5966d3cc971047366 *html/pfm.html
92038180441716332f48acd2e8fa7ad4 *html/pfm_path.html
4dd2457d48bd53722a63e001e072bed7 *html/plot.detrending.html
b9c5b57576545a8099cab67e05f89341 *html/plot.gc.html
65b18e051300653c8e41fd5fbff165be *html/plot.pairdistance.html
e5790a81224f7e56661fbced2b25b697 *html/plot.pairdistribution.html
dc65ff9512d66672c1efa7ab76a82116 *html/plot.positionprofile.html
fa89b5411ce50bbe6f9069414a7c4a76 *html/plot.positions.html
d6542c6129be593aa833402879531601 *html/plot.positions.simple.html
3a830613ad4e62c568c1a645cf303c2f *html/plot.tfbs.heatmap.html
1985931aa492889ad81264124c47f531 *html/plot.tfbs.venndiagram.html
1cc87552c5f1746ce094465f95a2e055 *html/plot.tfbslogo.html
c4fc1818f32ade2c2eae6a9f56995bd2 *html/predicted2pwm.html
3c1d0ac13c21a76ef161ea4681e7de2e *html/pseudocount.html
0738fcf6f0e7042680dd17bdb9c86956 *html/rtfbs.html
8872d80bdd4a4bd13273ba6549e31cb0 *html/search.gadem.html
87c451c0edb851fec5a46514fce01b31 *html/search.pwm.html
b19759bf247b88b048a05a6e42680786 *html/seqObj.html
1c430441d01ab053ba7e5fd4b41e8423 *html/sequence.html
5bec27e31946dd0ea231e7da091fb2af *html/sequence_origin.html
c16b8894cb70a63a27a5b82fc5e9a160 *html/sequence_source.html
7caf8685e0534cfa0c3cddc530ec12dc *html/sequence_type.html
e6e98f561a693c5c6b1e633a31b0d646 *html/sequences.html
aff732bf4bff8c4bca2a1483ba9f7829 *html/species.html
476701df886eb3626cc007938b447434 *html/testCpG.html
1cb0a206068bbf5f4317ba60217fee1f *html/threshold.html
2214d07001f6b6bb3bf9a8d985b9e6db *html/uid.html
2eb42f9f37e3d3b6c0d9f1f90a24e9e3 *html/upstream.html
fffda7dc82f92059ae130382b9bc803d *html/write.bindingsites.html
6c943fc34749c5517d75a86cb44fc34e *html/write.bindingsites.table.html
abb15b3715f98cb1cdfe04c5348ebba2 *html/write.pairs.html
90ddd9438c71fe4e8db2a6bc5b524a4c *html/write.sequences.html
b4211ebec6d576c6ab65ba3550d06864 *unitTests/runit-cobindR.R
c60cdccdabfc9bd25185e628114f7ae0 *unitTests/runit-configuration.R
