write.bindingsites {cobindR} | R Documentation

## writes predicted binding sites as a BED file.

### Description

writes predicted binding sites as a BED file.

### Usage

    ## S4 method for signature 'cobindr'
    write.bindingsites(x, file = NULL, background = FALSE)

### Arguments

`x` | an object of the class "cobindr", which holds all necessary information about the sequences and the predicted binding sites.
`file` | path to file. If filename is 'NULL' a filename is generated based on the name of the object of class "cobindr".
`background` | logical flag. If background is 'TRUE' the binding sites found in the background sequences are used.

### Note

At the moment write.bindingsites() only works for sequences based on gene ids. Otherwise please use write.bindingsites.table().

### Author(s)

Stefan Kroeger <kroeger@informatik.hu-berlin.de>

### See Also

`write.bindingsites.table`, `write.pairs`, `write.sequences`, `write`

[Package cobindR version 1.24.0 Index]