plotting {chromstaR} | R Documentation

## chromstaR plotting functions

### Description

This page provides an overview of all chromstaR plotting functions.

### Details

Plotting functions that work on `uniHMM` objects:

`plotHistogram`

  Read count histogram with fitted mixture distributions.

Plotting functions that work on `multiHMM` objects:

`heatmapCountCorrelation`

  Heatmap of read count correlations.

`heatmapTransitionProbs`

  Heatmap of transition probabilities of the Hidden Markov Model.

`heatmapCombinations`

  Binary presence/absence pattern of combinatorial states.

`plotExpression`

  Boxplot of expression values that overlap combinatorial states.

Plotting functions that work on `multiHMM` and `combinedMultiHMM` objects:

`heatmapCountCorrelation`

  Heatmap of read count correlations.

`plotEnrichCountHeatmap`

  Heatmap of read counts around annotation.

`plotEnrichment`

  Enrichment of combinatorial states around annotation.

`plotFoldEnrichHeatmap`

  Enrichment of combinatorial states at multiple annotations.

`plotExpression`

  Boxplot of expression values that overlap combinatorial states.

Other plotting functions:

`heatmapCombinations`

  Binary presence/absence pattern of combinatorial states.

[Package chromstaR version 1.12.0 Index]