assembleKmers {chromVAR} | R Documentation

## assembleKmers

### Description

function to create de novo motifs from kmers based on deviations

### Usage

    assembleKmers(object, threshold = 1.5, p = 0.01, progress = TRUE)

### Arguments

`object` | kmer chromVARDeviations object
`threshold` | variability threshold
`p` | p value threshold for inclusion of kmer
`progress` | show progress bar?

### Details

function for assembling de novo kmers from kmer deviations

### Value

list with (1) motifs: de novo motif matrices, (2) seed: seed kmer for de novo motif

[Package chromVAR version 1.8.0 Index]