import_oncofuse {chimeraviz} | R Documentation

## Import results from a oncofuse run into a list of Fusion objects.

### Description

A function that imports the results from a oncofuse run, typically from a results.filtered.tsv file, into a list of Fusion objects.

### Usage

    import_oncofuse(filename, genome_version, limit)

### Arguments

`filename` | Filename for the oncofuse results .tsv file.
`genome_version` | Which genome was used in mapping (hg19, hg38, etc.).
`limit` | A limit on how many lines to read.

### Details

This import function was contributed by Lavinia G, ref https://github.com/stianlagstad/chimeraviz/issues/47#issuecomment-409773158

### Value

A list of Fusion objects.

### Examples

    oncofuse833ke <- system.file(
      "extdata",
      "oncofuse.outfile",
      package="chimeraviz")
    fusions <- import_oncofuse(oncofuse833ke, "hg19", 3)
    # This should import a list of 3 fusions described in Fusion objects.

[Package chimeraviz version 1.12.3 Index]