partner_gene_junction_sequence {chimeraviz} | R Documentation

## Get the junction sequence from a PartnerGene object

### Description

This getter retrieves the junction sequence from a PartnerGene object

### Usage

    partner_gene_junction_sequence(x)

    ## S4 method for signature 'PartnerGene'
    partner_gene_junction_sequence(x)

### Arguments

`x` | The PartnerGene object you wish to retrieve the junction sequence for.

### Value

The upstream fusion partner gene junction sequence.

### Examples

    # Load data
    defuseData <- system.file(
      "extdata",
      "defuse_833ke_results.filtered.tsv",
      package="chimeraviz")
    fusions <- import_defuse(defuseData, "hg19", 1)
    fusion <- fusions[[1]]
    # Get the junction sequence from the upstream fusion partner gene
    partner_gene_junction_sequence(upstream_partner_gene(fusion))

[Package chimeraviz version 1.12.3 Index]