87da6b4e55a2610f7384c43e1ed9751b *CITATION
5aa586f8f2c2457ca28f60f45f36264f *DESCRIPTION
32eb12d7464d6aefd76cbac9d256fcfe *INDEX
0e9d85d6327e069ce40f0b4b9c227757 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
4f569c59c54cdb0c7faa8b112531237e *Meta/hsearch.rds
5ac8b37dc5caea35f206e46b1e493c17 *Meta/links.rds
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f7c7c58d27b0772dde782c7b933d432e *Meta/vignette.rds
34d63c8de3a7d64927f016cb112be86f *NAMESPACE
44bf771963a999485ec375203ff141e8 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/chimera
6511a21e153db015735ee6d12c40f5f6 *R/chimera.rdb
34add665b2e2fcc9838a4ac9a81b04f5 *R/chimera.rdx
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ed66ceb68482d7e52fed5951c94484a6 *doc/chimera.Rnw
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f1a31d70585ba05625885ff865f34fd5 *examples/Edgreen_fm.txt
b57ff34cd2f1aa0bfc9d14cbbf87442c *examples/Edgren_cs.txt
152c55b75090f883955f048f2d9fe35d *examples/Edgren_df.tsv
c159f47c7c39b4f0b1823fd150e223b2 *examples/Edgren_true.positives.txt
2faba782f61897fb1319300091d58d6e *examples/SULF2_ARFGEF2.fa
9ab4df2bc9cc084a9454bc7e4f073188 *examples/defuse_TP_FP.txt
302facd0bcc2ee5f4d7135646ad1721d *examples/edgren.stat.detection.txt
c67548992c68b3a43d14e31c0c921f52 *examples/fset_ARFGEF2-SULF2.rda
5cefa5be16527f831323b9f67bb11f13 *examples/mcf7.FMFusionReport
10bd6253adbee50ede9e25ef6ee874d0 *examples/mcf7_sample_1.fq
69b7f605646866d6881f21384e9e89da *examples/mcf7_sample_2.fq
a72fdea74c7ad1536707aeeaae4cf004 *examples/mcf7_trs_accepted_hits.bam
25b948c6dd395485bd9e5d62a432b0b1 *examples/uc002xtx.4-272_uc010zyd.2-988.fa
c15d087b75f5024b71b68d8e6dfae9fc *examples/uc002xtx.4-272_uc010zyd.2-988_R1.fastq
736dd356c6e5cc9fe12be768e8b9b95e *examples/uc002xtx.4-272_uc010zyd.2-988_R2.fastq
836a3e68c55bf760fa1849d15115f204 *examples/uc002xvp.1-243_uc002iyu.4-1031.fa
6764ab1e04832069f932c6d5570347ec *examples/uc002xvp.1-243_uc002iyu.4-1031_R1.fastq
8718b127a343845ce4bf4f51362aeb1f *examples/uc002xvp.1-243_uc002iyu.4-1031_R2.fastq
1f392fb664bca97839899b6ca935aed1 *help/AnIndex
4df1e581b69a99e95fa89e3a7fa6bb53 *help/aliases.rds
55c0119e956206a3d470a3deffab6436 *help/chimera.rdb
75750525e3d9748083240d57a3f4bcbc *help/chimera.rdx
af298f26588c9aa2513e8e5981bf8e61 *help/paths.rds
b7d179d17a2c234198331b14e4ca7046 *html/00Index.html
639e842a6012f9199344f69dee743da5 *html/MHmakeRandomString.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a7ab2a6d336c9c8fe3c8e86b78195a36 *html/bam2fastq.html
f4c5579399d4d3e629e344dad26041b3 *html/breakpointOverlaps.html
288615b60be32bb250f0096025437b1c *html/chimera-package.html
eaee50c4c8b8efcd6d410ff51f67bc96 *html/chimeraSeqSet.html
d184ff9562927b44e6707c8e39c6ba98 *html/chimeraSeqs.html
9d0f10e20a0834e95672d1de1365f570 *html/class.fSet.html
33fef00f7c4c04984bf8c69a321819d4 *html/defuseTPTN.html
7156d87de69aa30c652074f29c94a032 *html/filterList.html
01fa6ffa4c0d2a783fcd63784c1a0421 *html/filterSamReads.html
5a7961ebd9aab32531a3e8f7b80af61d *html/fusionName.html
2b2d3c5fb7e39c5368f43587f3f7c28e *html/fusionPeptides.html
6c28001b176ed5ca2a8c1ac72467a8a6 *html/gapfillerInstallation.html
82079120f40efea32b7eb5e566d65c13 *html/gapfillerRun.html
cd31ee92ff2de5a3c8b1b5b71cc05eeb *html/gapfillerWrap.html
4002c7d71ff35b1e9fb4602e8c13b132 *html/importFusionData.html
957ad08073b102a08567cdc7c0aecfca *html/is.fSet.html
529e431be1975965d7a9e481b6b23a36 *html/newfSet.html
f5995774cc331f3043dfb335d9b629fc *html/oncofuseInstallation.html
72c10e0822a338b00432079cceb30902 *html/oncofuseRun.html
6eed056e913b3a51730eb39196f18bfb *html/picardInstallation.html
e63dc4ab1f7d1c46bb8eff3fffeae686 *html/plotCoverage.html
af7088988d4d228103f372c8f71cc1f8 *html/prettyPrint.html
8c0d974aaa0947e2c14a63002d028862 *html/removingErrorLine.html
9e19605157f83be85e0d86edd93d68da *html/starInstallation.html
b6440bb5285440fbd672a78662e38357 *html/starReads.html
a84d530a5acc1758067fbb1d3ad51b3f *html/starRun.html
c687a1c37a7c75c4a7df4ed38ec09397 *html/subreadRun.html
b56f55f7d22fe98f76c90bf5e8a9fcab *html/supportingReads.html
be7caad47d4efe3ff002a76bdfa9e84a *html/tophatInstallation.html
c0222973dc5aa11a8c86d6687ce23a9c *html/tophatRun.html
a10858661841f78023b477c975970567 *html/validateSamFile.html
91c6e0d8ab37366f2040844a52fce700 *libs/i386/chimera.dll
d0232894937d7fa6b73b0fc33ab87fc7 *libs/x64/chimera.dll
