prettyPrint {chimera} | R Documentation

## A function to represent a list of fSet as a dataframe

### Description

A function reorganizing a list of fSet in a dataframe structure. The dataframe is then saved in a tab delimited file

### Usage

    prettyPrint(list, filename, fusion.reads=c("all","spanning"))

### Arguments

`list` | a list of fSet object
`filename` | the name of the file in which the dataframe is printed
`fusion.reads` | it allows to extract spanning reads associated to the SeedCount slot or all the detected reads associate to the RescuedCount

### Author(s)

Raffaele A Calogero

### Examples

    #tmp <- importFusionData("fusionmap", paste(find.package(package="chimera"),"/examples/mcf7.FMFusionReport", sep=""), org="hg19")
    #fusion.names <- fusionName(tmp)
    #tmp1 <- filterList(tmp, type="fusion.names", fusion.names[c(1,3,7)], parallel=FALSE)
    #prettyPrint(tmp1, "tmp1.df.txt", fusion.reads="spanning")

[Package chimera version 1.27.1 Index]