# Find chromosome regions showing common gains/losses

## Documentation for package ‘cghMCR’ version 1.44.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

cghMCR | The constructor for the cghMCR class
cghMCR-class | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
colnames-method | Methods for Function colnames/rownames in Package 'cghMCR'
colnames-methods | Methods for Function colnames/rownames in Package 'cghMCR'
getSegments | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
getSegments-method | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
gol | Class "SGOL" reprents segments of gain or loss across samples
gol-method | Class "SGOL" reprents segments of gain or loss across samples
MCR | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
MCR-method | Class "cghMCR" is a S4 class for the identification of minimum common regions of gains or losses across samples
mergeMCRProbes | A function that appends probe ids to a data frame containing MCRs
method-method | Class "SGOL" reprents segments of gain or loss across samples
plot | Class "SGOL" reprents segments of gain or loss across samples
plot,methods | Class "SGOL" reprents segments of gain or loss across samples
plot-method | Class "SGOL" reprents segments of gain or loss across samples
plot.DNAcopy | A function to plot the original data along with the segments identified using segment of DNAcopy.
rownames-method | Methods for Function colnames/rownames in Package 'cghMCR'
rownames-methods | Methods for Function colnames/rownames in Package 'cghMCR'
segData | The constructor for the cghMCR class
SGOL | Class "SGOL" reprents segments of gain or loss across samples
SGOL-class | Class "SGOL" reprents segments of gain or loss across samples
threshold-method | Class "SGOL" reprents segments of gain or loss across samples
[-method | Methods for Function colnames/rownames in Package 'cghMCR'
[-methods | Methods for Function colnames/rownames in Package 'cghMCR'