celdaHeatmap,celda_G-method {celda} | R Documentation

## Heatmap for celda_CG

### Description

Renders an expression heatmap to visualize 'celda_CG()' results. The top 'nfeatures' for each module will be included in the heatmap.

### Usage

    ## S4 method for signature 'celda_G'
    celdaHeatmap(counts, celdaMod, nfeatures = 25, ...)

### Arguments

`counts` | Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'.
`celdaMod` | Celda object of class 'celda_G'.
`nfeatures` | Integer. Maximum number of features to select for each module. Default 25.
`...` | Additional parameters.

### Value

list A list containing the dendrograms and the heatmap grob.

### See Also

'celda_G()' for clustering features and 'celdaTsne()' for generating 2-dimensional coordinates.

### Examples

    data(celdaGSim, celdaGMod)
    celdaHeatmap(celdaGSim$counts, celdaGMod)

[Package celda version 1.2.4 Index]