620a41ecfcfef58ec46bdee0c6b86281 *DESCRIPTION
4b39c6f6c5c1cae40851f9bd7aad3d2a *INDEX
de4628b3c8a2ce746494ff8128ce40f0 *Meta/Rd.rds
94c294a405535af7365c3558fdc49457 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
a15116dbb64961f643651663d21d3c93 *Meta/hsearch.rds
3666278e2a4400e3c09cbbf896c136e1 *Meta/links.rds
4020cc2742b7f8bc97a91c28be0bce7c *Meta/nsInfo.rds
cf8ad5d2348c394999cecb34786c4362 *Meta/package.rds
cca270c67738a94d984cbefe1013fe63 *Meta/vignette.rds
4fd524212ec383ba47a49a031ee5af10 *NAMESPACE
f77e5430569c792149b7596240caa1e5 *NEWS.md
ebf0fc819595d631b8bf280c4b049940 *R/biscuiteer
8e79ec11fcadfcd7643529a2800b69f8 *R/biscuiteer.rdb
dcec2954d7c1aee10429b6924c7667d9 *R/biscuiteer.rdx
0adde9c30a80413435c5883fdbaf18ea *data/ENSR_subset.hg19.rda
b1355be5ec9d87afa92c617a211ceb9e *data/ENSR_subset.hg38.rda
d3b3899ba06144339ee83ba8fe4ba858 *data/GRCh37.chromArm.rda
ea35f87b69e6b1eee240462d3de1e647 *data/GRCh38.chromArm.rda
e9432085dba6233b4a53865985598fb2 *data/H9state23unmeth.hg19.rda
f942e9a779658c0d196a80bf2eb49a33 *data/H9state23unmeth.hg38.rda
bdbeb2f653476bd1c3812add4b1cfc0e *data/HMM_CpG_islands.hg19.rda
515534a7e5eb261dd9fd0e333d61b33c *data/HMM_CpG_islands.hg38.rda
3279b939a7b53ad38387447c4c9d2313 *data/clocks.rda
82f9894660885e9d11cba4aed146b513 *data/datalist
6869680f11325e482806c86b47151c77 *data/hg19.chromArm.rda
247bc9d7284208061b82dddc841ae191 *data/hg38.chromArm.rda
b6e4e4db1ef5838a88d1510221c32777 *data/seqinfo.hg19.rda
cd9fd1521718f84dc72b8ce64b9a5d7f *data/seqinfo.hg38.rda
d1226704e76cb1fcc92b52443320b337 *data/seqinfo.mm10.rda
2cf5a9826bfda4d1d01028d5993d4042 *doc/biscuiteer.R
f98e9c421f04bf730047078e3e80f71f *doc/biscuiteer.Rmd
d69a12ff0bbf4e246418c17ac05af58c *doc/biscuiteer.html
cdc7f49c14754d18b93edd50d3ed1529 *doc/biscuiteer.md
fd59ea6d8b1580f17f285940a639daa9 *doc/index.html
31048ae3d0a6b7953760336e638b86b7 *extdata/MCF7_Cunha_chr11p15.bed.gz
1971254c2e0f420e04d8119174949b1e *extdata/MCF7_Cunha_chr11p15.bed.gz.tbi
57b14e8560ff1cde06b7578b688f20af *extdata/MCF7_Cunha_chr11p15_shuffled.bed.gz
d6ff9139c2cd7728430fa6d969fe124a *extdata/MCF7_Cunha_chr11p15_shuffled.bed.gz.tbi
61309ab54074516a5b2973f632687741 *extdata/MCF7_Cunha_header_only.vcf.gz
d80cf4090040c37259bf284f3249834b *extdata/MCF7_Cunha_header_only.vcf.gz.tbi
cfb4a86e6b86ced7a5bce1e63ac54a11 *extdata/MCF7_Cunha_shuffled_header_only.vcf.gz
7b2b4a379f80df3f17e729eb04075171 *extdata/MCF7_Cunha_shuffled_header_only.vcf.gz.tbi
0ce8a985bef6bf213a2f7abe63238307 *help/AnIndex
fdc477d0a544633824d6ff724a4c7b57 *help/aliases.rds
744d7786a64ed582a2968452b4045f52 *help/biscuiteer.rdb
a3de86c58fc295106ffb0497b69fdfa3 *help/biscuiteer.rdx
467a199bed51092bc5527d96300d2f43 *help/paths.rds
931c826e6cb2488ce883be4bbe11cff6 *html/00Index.html
db93024839dce4cd99cf150cc0f3d267 *html/CpGindex.html
db6ef3d7acbe0420c29dce33c4305e22 *html/ENSR_subset.hg19.html
ffa4605c7b91b9fa811439578a3ab37b *html/ENSR_subset.hg38.html
00cf1a877e20dab77e7b11a8ed03d9be *html/GRCh37.chromArm.html
07ff6e7d410ee2a828e9cb42fe7c6134 *html/GRCh38.chromArm.html
88149fcad31e5a73755e022812ab960f *html/H9state23unmeth.hg19.html
c65e16c2eb191d828f51697adbd74ed5 *html/H9state23unmeth.hg38.html
f90a57498a58bf30cdb08ad48d877794 *html/HMM_CpG_islands.hg19.html
c2abbe716523f9a7d74069c4df2c0179 *html/HMM_CpG_islands.hg38.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a10d9a867aa4470089af09b7b6d6e0a8 *html/RRBSeq.html
f5bae90f522f968fc5ff81102f315bfe *html/WGBSage.html
ffab82a459d81871e4da8998828253fe *html/WGBSeq.html
e622ffef0e7226504093636fdbb7bf68 *html/atRegions.html
d5189d6610bcf386a4901e48e135a006 *html/binCoverage.html
a0ffd01d5b1f226bd62048e049600589 *html/biscuitMetadata.html
e53a923309c209253453df05d27510a1 *html/biscuiteer-methods.html
1e21beea63c62699839253ba10c41e2d *html/biscuiteer-package.html
873db963f9f00646443964c886282ca5 *html/byChromArm.html
de2e18eb356d4ee7bb17cd570bb6f436 *html/byExtremality.html
19eff5fe0e7c8aaec603a1c480084d5a *html/checkBiscuitBED.html
dad3e208d5da8d6774be9562475fd6e5 *html/clocks.html
d180e2be81ca3abb160236d72a8fcebb *html/condenseSampleNames.html
777c62ddcc9bad2ae87819cf9845f505 *html/extremality.html
808609acb9afce8b9dd667108a91952a *html/fexpit.html
27bc43e074362de7451c8748015a78b9 *html/filterLoci.html
66443c3d6a6d3362b26965eca7694961 *html/fixAge.html
04834217db4200c14721e1de547a9355 *html/fixNAs.html
a6ecf08b26b4c5181de8dc3c729912e4 *html/flogit.html
2686f20c37a828701f045fda3b29f783 *html/getClock.html
c54aa9e13ccebaaf79c5309a73c1345e *html/getLogitFracMeth.html
b646a18b2fc69d203afb9de458066369 *html/grToSeg.html
1b14ba67ed09b3fa3246ab3a426bf09b *html/hg19.chromArm.html
0eeba113725f9a5a6d263502e49e7af3 *html/hg38.chromArm.html
888be1147c78cc5ad7b4a9286f4653e3 *html/makeBSseq.html
84d95d586cf3e55f6f5320d2515658e7 *html/readBiscuit.html
93e2e89edb32fa0813c0d0d0c9df1400 *html/segToGr.html
6b4adb28d675c27ca57a101a0706aadb *html/seqinfo.hg19.html
2e376d148d4e99a9bf32272599cc6f1b *html/seqinfo.hg38.html
95a163bdf384bc43d35ade957ea94f23 *html/seqinfo.mm10.html
b59fe06171ff75b984c5b4b6d593658c *html/simplifySampleNames.html
23b5b66cfda1b693742c7471a9929861 *html/summarizeBsSeqOver.html
972797b73b7c9e61e910a31b8cae01be *html/unionize.html
39c1310b90fe5a0de192833a7df9f3d7 *scripts/clocks.R
73a881932be92dd2a1594cbef6303e4a *scripts/extdataDescription.md
62b582af8bfe316884406f04f44d7606 *scripts/genShuffledMCF7CunhaBed.py
