wm-port {bigmelon} | R Documentation

## Functions ported from wateRmelon

### Description

methods for extraenous functions from wateRmelon see respective manual pages.

### Usage

    ## S4 method for signature 'gdsn.class,gdsn.class'
    qual(norm, raw)
    ## S4 method for signature 'gds.class'
    predictSex(x, x.probes=NULL, pc=2, plot=TRUE, irlba=TRUE, center=FALSE, scale.=FALSE)
    ## S4 method for signature 'gdsn.class'
    predictSex(x, x.probes=NULL, pc=2, plot=TRUE, irlba=TRUE, center=FALSE, scale.=FALSE)

### Arguments

`norm` | normalized node (gdsn.class)
`raw` | raw node (gdsn.class)
`x` | gdsclass object or node corresponding to betas
`x.probes` | Default is NULL, is required to be supplied in bigmelon. logical or numeric vector containing indicies of X chromosome probes
`pc` | The principal component to guess sex across (usually the 2nd one in most cases)
`plot` | Logical, indicated whether or not to plot the prediction
`irlba` | Logical, indicate whether or not to use the faster method to generate principal components
`center` | Logical, indicate whether or not to center data around 0
`scale.` | Logical, indicate whether or not to scale data prior to prcomp

### Details

Filler Text

### Value

Returns expected output of functions from wateRmelon

### See Also

`wateRmelon`

[Package bigmelon version 1.12.0 Index]