anota2seqGetResidOutlierTest {anota2seq} | R Documentation

## Retrieve residOutlierTest

### Description

Retrieves the output of the anota2seqResidualOutlierTest function from the Anota2seqDataSet.

### Usage

    anota2seqGetResidOutlierTest(object)

    ## S4 method for signature 'Anota2seqDataSet'
    anota2seqGetResidOutlierTest(object)

### Arguments

`object` | An Anota2seqDataSet.

### Value

A list with the following items:

- confInt: The selected confInt (see function arguments).

- rnormIter: The number of sampled data sets.

- outlierMatrixLog: A logical matrix describing which residuals were outliers in the last iteration of the analysis.

- meanOutlierPerIteration: The fraction outliers per iteration.

- obtainedComparedToExpected: The ratio of the expected number of outlier residuals compared to the expected number of outliers given the selected confInt.

- nExpected Number of expected outlier residuals.

- nObtained Number of obtained outliers residuals.

### See Also

`anota2seqResidOutlierTest`

### Examples

    data(anota2seq_data)
    Anota2seqDataSet <- anota2seqDataSetFromMatrix(
        dataP = anota2seq_data_P[1:100,],
        dataT = anota2seq_data_T[1:100,],
        phenoVec = anota2seq_pheno_vec,
        dataType = "RNAseq",
        normalize = TRUE)
    # Run QC, it is mandatory for anota2seqResidualOutlierTest
    Anota2seqDataSet <- anota2seqPerformQC(Anota2seqDataSet)
    # Run the Residual outlier testing
    Anota2seqDataSet <- anota2seqResidOutlierTest(Anota2seqDataSet)

    #Get resdidual outlier testing
    rot <- anota2seqGetResidOutlierTest(Anota2seqDataSet)

[Package anota2seq version 1.8.0 Index]