diversity_beta_heatmap {animalcules} | R Documentation

## Beta diversity heatmap

### Description

Beta diversity heatmap

### Usage

    diversity_beta_heatmap(
      MAE,
      tax_level,
      input_beta_method,
      input_bdhm_select_conditions,
      input_bdhm_sort_by = c("nosort", "conditions")
    )

### Arguments

`MAE` | A multi-assay experiment object
`tax_level` | The taxon level used for organisms
`input_beta_method` | bray, jaccard
`input_bdhm_select_conditions` | Which condition to group samples
`input_bdhm_sort_by` | Sorting option e.g. "nosort", "conditions"

### Value

A plotly object

### Examples

    data_dir = system.file("extdata/MAE.rds", package = "animalcules")
    toy_data <- readRDS(data_dir)
    p <- diversity_beta_heatmap(toy_data,
                                tax_level = "genus",
                                input_beta_method = "bray",
                                input_bdhm_select_conditions = "DISEASE",
                                input_bdhm_sort_by = "conditions")
    p

[Package animalcules version 1.2.1 Index]