amplican_print_reads {amplican} | R Documentation

## Pretty print forward and reverse reads aligned to each other.

### Description

Usefull and needed for barcode reports.

### Usage

    amplican_print_reads(forward, reverse)

### Arguments

`forward` | (character or vector of characters) Forward reads.
`reverse` | (character or vector of characters) Will be reverse complemented before alignment.

### Value

Vector with alignments ready to be printed.

### Examples

    # load example data
    unassigned_file <- system.file('extdata', 'results',  'alignments',
                                   'unassigned_reads.csv', package = 'amplican')
    unassigned <- data.table::setDF(data.table::fread(unassigned_file))
    # sort by frequency
    unassigned <- unassigned[order(unassigned$BarcodeFrequency,
                                   decreasing = TRUE), ]
    # print alignment of most frequent unassigned reads
    cat(amplican_print_reads(unassigned[1, 'Forward'],
                             unassigned[1, 'Reverse']),
              sep = "\n")

[Package amplican version 1.8.2 Index]