extractEvents {amplican} | R Documentation

## Extract AlignmentsExperimentSet events into data.frame.

### Description

Extracts events (insertions, deletions, mismatches) from alignments into data.frame. Can use multiple cores as process is quite slow. All events are relative towards forward strand. "-" in strand column indicates which events were from reverse reads.

### Usage

    extractEvents(object, use_parallel = FALSE)

### Arguments

`object` | (AlignmentsExperimentSet)
`use_parallel` | (boolean) Set to TRUE, if you have registered multicore back-end with `register`.

### Value

(data.frame) Compatible with `GRanges` style.

### Examples

    file_path <- system.file("extdata", "results", "alignments",
                             "AlignmentsExperimentSet.rds", package = "amplican")
    aln <- readRDS(file_path)
    extractEvents(aln)

[Package amplican version 1.8.2 Index]