plotAlevinBarcodeCollapse {alevinQC} | R Documentation

## Summary plot of cell barcode collapsing

### Description

Plot the original frequency of each cell barcode in the original whitelist against the frequency after collapsing similar cell barcodes.

### Usage

    plotAlevinBarcodeCollapse(cbTable)

### Arguments

`cbTable` | `data.frame` (such as the `cbTable` returned by `readAlevinQC`) with barcode frequencies before and after collapsing.

### Value

A ggplot object

### Author(s)

Charlotte Soneson

### Examples

    alevin <- readAlevinQC(system.file("extdata/alevin_example_pre0.14",
                                       package = "alevinQC"))
    plotAlevinBarcodeCollapse(alevin$cbTable)

[Package alevinQC version 1.2.0 Index]