# Probe Dependent Nearest Neighbours (PDNN) for the affy package

## Documentation for package ‘affypdnn’ version 1.60.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

affypdnn | Position Dependant Nearest Neighbors model for affy
chiptype.pdnn.params | Chip-type specific data
expressopdnn | Position Dependant Nearest Neighbors model for affy
find.params.pdnn | A function to find the experiment specific PDNN parameters
generateExprVal.method.pdnn | Compute PM correction and summary expression value
hgu95av2.pdnn.params | Chip-type specific data
matplotProbesPDNN | Plot the PDNN computed probe intensities
params.dilution | Parameters for the Dilution dataset
pdnn-energy-parameter_hg-u95av2 | Chip-type specific data
pdnn.params.chiptype | A function to fit PDNN parameters
pdnn.scalevalue.exprSet | Position Dependant Nearest Neighbors model for affy
pmcorrect.pdnn | Compute PM correction and summary expression value
pmcorrect.pdnnpredict | Compute PM correction and summary expression value
transform.ProbeSet | A function to transform a ProbeSet