useDynLib("affyPLM")

import(zlibbioc)
import(methods)

#Generated by codetoolsBioC version 0.0.17
#Timestamp: Tue Sep  4 06:13:44 2012

#Imports: affy, Biobase, BiocGenerics, gcrma, graphics, grDevices,
#         methods, preprocessCore, stats

importFrom(BiocGenerics, annotation, "annotation<-", normalize)
importMethodsFrom(BiocGenerics, cbind, colnames, density, eval, lapply,
                  mget, ncol, nrow, paste, pmax, pmin, rbind,
                  residuals, rownames, unique, weights)

importClassesFrom(Biobase, AnnotatedDataFrame, ExpressionSet, MIAME)

importMethodsFrom(affy, cdfName, exprs, geneNames, indexProbes,
                  intensity, "intensity<-", MAplot, Mbox, mm, "mm<-",
                  mmindex, pm, "pm<-", pmindex, probeNames)

importMethodsFrom(Biobase, annotation, description, experimentData,
                  "exprs<-", pData, "pData<-", phenoData,
                  "phenoData<-", preproc, "preproc<-", rowMedians,
                  sampleNames, "sampleNames<-")

importMethodsFrom(methods, show)

importFrom(affy, bg.correct.mas, cleancdfname, getCdfInfo,
           maffy.normalize, maffy.subset, ma.plot, mva.pairs,
           normalize.invariantset, normalize.loess, normalize.qspline,
           plotDensity, upDate.normalize.AffyBatch.methods)

importFrom(Biobase, addVigs2WinMenu)

importFrom(gcrma, bg.adjust.gcrma)

importFrom(graphics, abline, axis, box, boxplot, image, layout, par, hist)

importFrom(grDevices, col2rgb, heat.colors, rgb, terrain.colors)

importFrom(preprocessCore, normalize.quantiles,
           normalize.quantiles.in.blocks)

importFrom(stats, approx, as.formula, median, model.matrix, quantile,
           sd, terms)

 ##export everything that does not start with a .
 exportPattern("^[^\\.]")
 exportClasses(PLMset)
