get_significant_biomarker {adaptest} | R Documentation

## Extract statistically significant biomarkers

### Description

Extract statistically significant biomarkers

### Usage

    get_significant_biomarker(object, cutoff = 0.5)

### Arguments

`object` | `data_adapt` object
`cutoff` | cut-off value for composition percentage

### Value

(integer vector) of significant gene index

### Examples

    set.seed(1234)
    data(simpleArray)
    simulated_array <- simulated_array
    simulated_treatment <- simulated_treatment

    adaptest_out <- adaptest(Y = simulated_array,
                             A = simulated_treatment,
                             W = NULL,
                             n_top = 5,
                             n_fold = 3,
                             learning_library = 'SL.glm',
                             parameter_wrapper = adaptest::rank_DE,
                             absolute = FALSE,
                             negative = FALSE)
    get_significant_biomarker(adaptest_out)

[Package adaptest version 1.6.1 Index]