run_comparison_catalogues {YAPSA} | R Documentation

## Compare all strata from different stratifications

### Description

Compare all strata from different orthogonal stratification axes, i.e. othogonal SMCs by cosine similarity of mutational catalogues. Function similar to `run_comparison_general`. First calls

- `make_catalogue_strata_df`, then

- `make_comparison_matrix`

### Usage

    run_comparison_catalogues(in_stratification_lists_list, output_path = NULL,
      in_nrect = 5, in_attribute = "")

### Arguments

`in_stratification_lists_list` | List of lists with entries from different (orthogonal) stratification axes or SMCs
`output_path` | Path to directory where the results, especially the figure produced by `corrplot` is going to be stored.
`in_nrect` | Number of clusters in the clustering procedure provided by `corrplot`
`in_attribute` | Additional string for the file name where the figure produced by

### Value

The comparison matrix of cosine similarities.

### See Also

`make_comparison_matrix`

`run_comparison_general`

### Examples

     NULL

[Package YAPSA version 1.12.0 Index]