waterfall {Xeva} | R Documentation

## waterfall plot Creates waterfall plot for a given drug.

### Description

waterfall plot Creates waterfall plot for a given drug.

### Usage

    waterfall(object, res.measure, drug = NULL, group.by = NULL,
      summary.stat = c(";", "mean", "median"), tissue = NULL,
      model.id = NULL, model.type = NULL, type.color = "#cc4c02",
      legend.name = NULL, yname = NULL, title = NULL, sort = TRUE)

### Arguments

`object` | The `XevaSet` object
`res.measure` | PDX model drug response measure
`drug` | Name of the drug
`group.by` | Group drug response data
`summary.stat` | How to summarize multiple values
`tissue` | Tissue type
`model.id` | Indicates which `model.id` to plot. Default `NULL` will plot all models
`model.type` | Type of model, such as mutated or wild type
`type.color` | A list with colors used for each type in the legend
`legend.name` | Name of the legend
`yname` | Name for the y-axis
`title` | Title of the plot
`sort` | Default `TRUE` will sort the data

### Value

waterfall plot in ggplot2

### Examples

    data(brca)
    waterfall(brca, drug="binimetinib", res.measure="best.avg.response_published")
    ## example with model.type where we color the models by TP53 mutation type
    mut <- summarizeMolecularProfiles(brca,drug = "binimetinib", mDataType="mutation")
    model.type <- Biobase::exprs(mut)["TP53", ]
    waterfall(brca, drug="binimetinib", res.measure="best.avg.response_published",
              tissue="BRCA", model.id=names(model.type), model.type= model.type)

[Package Xeva version 1.2.0 Index]