XCIR-package            Estimating inactivated X chromosome expression
addAnno                 Read annotation file
annotateX               Annotate
betaBinomXI             Fit mixture model
betaParam               Converting beta distribution parameters
consensusXCI            XCI consensus
getGenicDP              Get expression at the gene level
getXCIstate             Classify X-genes
mart_genes              biomaRt genes
plotBBCellFrac          Plot cell fraction estimates
plotQC                  Plot QC
readRNASNPs             Read SNPs from RNA-Seq
readVCF4                Read VCF file
readXCI                 Read a list of known inactivated genes
sample_clean            Sample estimates
