GO_SS-class {ViSEAGO} | R Documentation

## GO_SS class object definition.

### Description

This class is invoked by `build_GO_SS` method in order to store `enrich_GO_terms-class` object, Information Content (IC), and GO terms or groups distances objects based on semantic similarity.

### Slots

`db`

  should be "Bioconductor", "EntrezGene", "Ensembl", or "Uniprot" ressource name.

`stamp`

  date of stamp or annotation version if available in `character`.

`organism`

  target species GO anotation in `character`.

`ont`

  used ontology with "MF", "BP", or "CC".

`topGO`

  `list` with topGO objects summary informations.

`IC`

  Information Content (IC)

`enrich_GOs`

  `merge_enrich_terms` output object (`enrich_GO_terms-class` object).

`terms_dist`

  `list` of GO terms or groups distances objects based on semantic similarity.

### See Also

Other GO_semantic_similarity: `build_GO_SS`, `compute_SS_distances`

[Package ViSEAGO version 1.0.0 Index]