GO_clusters-class {ViSEAGO} | R Documentation

## GO_clusters class object

### Description

This class is invoked by `GOterms_heatmap` and `GOclusters_heatmap` methods to store all results produced.

### Slots

`db`

  database source.

`stamp`

  date of stamp.

`organism`

  target species.

`topGO`

  topGO objects summary.

`ont`

  ontology (MF, BP, or CC).

`IC`

  Information Content (IC).

`enrich_GOs`

  `enrich_GO_terms-class` object.

`terms_dist`

  distance between GO terms based on semantic similiarity.

`clusters_dist`

  distance between GO groups based on semantic similiarity.

`hcl_params`

  Hierarchical clustering parameters used.

`dendrograms`

  GO terms and samples `dendrograms`.

`samples.gp`

  samples groups.

`heatmap`

  GO terms and GO groups heatmaps.

### See Also

Other GO_clusters: `GOclusters_heatmap`, `clusters_cor`, `compare_clusters`, `show_heatmap`, `show_table`

[Package ViSEAGO version 1.0.0 Index]