plotPoolPerformance {TarSeqQC} | R Documentation

## Plot pool performance of a TargetExperimentList object.

### Description

`plotPoolPerformance` plots density and/or box-plot of the analyzed attribute achieved in each PCR pool. These graphics could be displayed together using the ggplot2 geom_violin method.

### Usage

    plotPoolPerformance(object, dens = FALSE, join = FALSE, log = TRUE,
        attributeThres = NULL)

    ## S4 method for signature 'TargetExperimentList'
    plotPoolPerformance(object, dens = FALSE,
        join = FALSE, log = TRUE, attributeThres = NULL)

### Arguments

`object` | TargetExperimentList class object.
`dens` | Logical indicating if density plot should be included
`join` | Logical indicating if boxplot and density function should be plotted together using the ggplot2 geom_violin method. For it uses, dens should be TRUE.
`log` | Logical indicating if the attribute should be considered in log10 scale.
`attributeThres` | Numeric indicating the attribute interval extreme values. It is not a mandatory parameter but if it is specified,then the plots will be colored according to the interval in which falls the attribute median values.

### Value

ggplot2 graphics.

### Author(s)

Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar

### Examples

    ## Loading the TargetExperimentList object
    data(TEList, package="TarSeqQC")
    # Attribute boxplot and density plot exploration
    g<-plotPoolPerformance(TEList,log=FALSE)
    # x11(type="cairo")
    if(interactive()){
    g
    }

[Package TarSeqQC version 1.16.0 Index]