myCounts {TarSeqQC} | R Documentation

## A pileup matrix example for use the TarSeqQC R package.

### Description

The pileup matrix obtained using pileupCounts. It is built on the non-real dataset containing amplicon sequencing results to test the TarSeqQC package.

### Format

A data.frame object

### Details

pos

  genomic positions of the explored features.

seqnames

  chromosomes of the explored features.

seq

  reference nucleotide corresponding to the genomic position.

A,C,G,T,N

  number of nucleotide read.

=

  Amount of read nucleotides matching the reference nucleotide.

-

  Amount of read deletions.

which_label

  feature location.

counts

  Total read counts

### Author(s)

Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar

### Source

see `TargetExperiment-class`

### See Also

Other TargetExperiment: `TargetExperiment-class`, `TargetExperiment`, `ampliPanel2`, `ampliPanel`, `initialize`

[Package TarSeqQC version 1.16.0 Index]