as.gene {TRONCO} | R Documentation

## as.gene

### Description

Return the genotypes for a certain set of genes and type of events. Input 'x' should be a TRONCO compliant dataset - see `is.compliant`. In this case column names are substituted with events' types.

### Usage

    as.gene(x, genes, types = NA)

### Arguments

`x` | A TRONCO compliant dataset.
`genes` | The genes to consider, if NA all available genes are used.
`types` | The types of events to consider, if NA all available types are used.

### Value

A matrix, subset of `as.genotypes(x)` with colnames substituted with events' types.

### Examples

    data(test_dataset)
    as.gene(test_dataset, genes = c('EZH2', 'ASXL1'))

[Package TRONCO version 2.18.0 Index]