tpp2dCalcFractAbundance {TPP} | R Documentation

## Calculate fractional abundance and DMSO ratio of successive sumionareas (usage of function is only reasonable when at least two temperatures are multiplexed!)

### Description

Calculates fractional abundance and DMSO ratio of successive sumionareas and creates respective columns which are added two the data frame which is handed over

### Usage

    tpp2dCalcFractAbundance(configTable = NULL, data, intensityStr = NULL,
      idVar = NULL)

### Arguments

`configTable` | DEPCRECATED
`data` | data frame of TPP-CCR results (e.g. obtained by `run2DTPPCCR`).
`intensityStr` | DEPCRECATED
`idVar` | DEPCRECATED

### Value

Data frame that was handed over with additional columns of fractional abundance and DMSO1 vs DMSO2 ratio

### Examples

    data(panobinostat_2DTPP_smallExample)

    # Import data:
    datIn <- tpp2dImport(configTable = panobinostat_2DTPP_config,
                          data = panobinostat_2DTPP_data,
                          idVar = "representative",
                          addCol = "clustername",
                          intensityStr = "sumionarea_protein_",
                          nonZeroCols = "qusm")

    # View attributes of imported data (experiment infos and import arguments):
    attr(datIn, "importSettings") %>% unlist
    attr(datIn, "configTable")

    # Compute fractional abundance:
    datDMSORatio <- tpp2dCalcFractAbundance(data = datIn)
    colnames(datDMSORatio)

[Package TPP version 3.14.1 Index]