stat_mat {TFEA.ChIP} | R Documentation

## Data frame, output from the function getCMstats from the TFEA.ChIP package

### Description

Used to run examples. Output of the function getCMstats from the TFEA.ChIP package, is a data frame storing the following fields:

- Accession: GEO or Encode accession ID for each ChIP-Seq dataset.

- Cell: cell type on which the ChIP-Seq experiment was performed

- Treatment: treatment used on the cells

- TF: Transcription Factor tested.

- p.value: raw p-value of the Fisher test performed on a contingency matrix for each ChIP-Seq experiment.

- OR: Odds Ratio on the contingency matrix done for each ChIP-Seq experiment.

- log2.OR

- adj.p.value: p-value adjusted by FDR

- log10.adj.pVal

- distance: euclidean distance from (log10.adj.pval, log2.OR) to the coordinates origin.

### Usage

    data("stat_mat")

### Format

a data frame of 10 rows and 6 variables

[Package TFEA.ChIP version 1.6.0 Index]