TCGAanalyze_DEA_Affy {TCGAbiolinks} | R Documentation

## Differentially expression analysis (DEA) using limma package.

### Description

Differentially expression analysis (DEA) using limma package.

### Usage

    TCGAanalyze_DEA_Affy(AffySet, FC.cut = 0.01)

### Arguments

`AffySet` | A matrix-like data object containing log-ratios or log-expression values for a series of arrays, with rows corresponding to genes and columns to samples
`FC.cut` | write

### Value

List of list with tables in 2 by 2 comparison of the top-ranked genes from a linear model fitted by DEA's limma

### Examples

    ## Not run:
    to add example

    ## End(Not run)

[Package TCGAbiolinks version 2.14.0 Index]