e8f0286cd187f4ccee1f4ca8a0b23b58 *DESCRIPTION
87b5399d10c4f42372aa7ce1223c77ce *INDEX
94ef8b6e7e079c0636579a881c1c22bd *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
94e0abf376304464ce27f283e96c0111 *Meta/hsearch.rds
cea82d366da703dbfdfdcf1f5997735a *Meta/links.rds
b08bb21e01b2645604cd1a0b4cb848f7 *Meta/nsInfo.rds
052c7528a68725c81e188284588f0ba6 *Meta/package.rds
ed67ac830b0fa7412bf5be079cc1c63a *Meta/vignette.rds
cda6857c1a8570d689380c737a67ee7f *NAMESPACE
188521dc51287dda57889dd35ef026d4 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/StructuralVariantAnnotation
0eefee3ac0673ad53eeb1ad0327fe861 *R/StructuralVariantAnnotation.rdb
5cf3aecf07dd0d7bc573ad5f9c809245 *R/StructuralVariantAnnotation.rdx
1891dbf87ca9fce1945b16dd64840348 *doc/index.html
70672079d5db003697bd0768062b93bf *doc/vignettes.R
54a1f4d8ecc042b4c462e9f1db312bf3 *doc/vignettes.Rmd
9dc34ee759c0fcfc7d1d2a49dfc9485b *doc/vignettes.html
12ee44ba494bc06baa7369469700f7c8 *extdata/COLO829T.purple.sv.ann.vcf.gz
683caf164bb74e29552f0177e876add2 *extdata/breakdancer-1.4.5.vcf
feeaad3d5ec237cff7761c7d04431b78 *extdata/breakend.vcf
2ab83f00d360b12f5cece00c82e5c0b0 *extdata/crest.vcf
c972e2f7fde3e39dcafa159e96732617 *extdata/delly-0.6.8.vcf
4927fa10b4842cfa4ba38c9d5fc7d8c8 *extdata/gridss-na12878.vcf
cc82ed7e26d2d0490714f9c52882a605 *extdata/gridss.bedpe
5e5ae0f5c15eef2943d75b9168031c47 *extdata/gridss.vcf
8cd93102afc733e1f81cd323eacf21c5 *extdata/manta-0.29.6.vcf
1cf2f3eda533b5cd761a71a78cac7ad7 *extdata/manta-1.1.1.vcf
cb53d99797872f13ba066e3551a6d3d2 *extdata/multipleAltSVs.vcf
7b54dafc7a0b36ddaa85c861e745b8f9 *extdata/na12878_chr22_Sudmunt2015.vcf
ebbaf305e07754a431a7200b122a8561 *extdata/na12878_chr22_crest.vcf
63206a566ee14bcb7fedd85e214a9f10 *extdata/na12878_chr22_hydra.vcf
489550bafad9c87b6441721b379966a6 *extdata/pindel-0.2.5b6.vcf
fbb8e101fb854f488c4f26df2b490451 *extdata/simple.vcf
a489a6898e1a6c617b09baa2f0fbc037 *extdata/tigra-0.3.7.vcf
a0a6d82bbcd08187186af68b4c339819 *extdata/unnamed.bedpe
27f53f9124a138ed7da6181719f34881 *extdata/vcf4.2.example.sv.vcf
c697e521e40c093b4b07df6b09ba27cc *help/AnIndex
4d206322e9f4f48dea42254ed05b62ff *help/StructuralVariantAnnotation.rdb
79f4110466f02acfcadd5410b5353e01 *help/StructuralVariantAnnotation.rdx
e2c79469dc383df852d48cd432ce0ea0 *help/aliases.rds
0ca2d979a6dab06caf510c2bf7e77932 *help/paths.rds
a450bfb662087646a0641a3cbb1e907e *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f99cfb52304b0b19f4a04cd49b779e7d *html/StructuralVariantAnnotation.html
dc40f42e6af0facc522e10bce8247e21 *html/align_breakpoints.html
fb2401b833d2c29f0d452d0902a83148 *html/breakendRanges.html
69c087bfb1b2b1cdf24ae55e103cc539 *html/breakpointGRangesToVCF.html
111fb9594a8461a9964938f1db4c41fd *html/breakpointRanges.html
4effb882485d4250ee20b220f85e97db *html/breakpointgr2bedpe.html
6f2c9308bb48e987242fa58f97ce0463 *html/calculateReferenceHomology.html
1b57a0dc8aac51425d6b335874f33431 *html/countBreakpointOverlaps.html
a76b17a027c295d816a8beba62d50072 *html/dot-constrict.html
33463949e1299f63c81847d8570c873d *html/dot-isSymbolic.html
a03e203a2be5f125ee8833df13f2cd7d *html/dot-pairwiseLCPrefix.html
72bfde042f2c9a5de8d28328ac85f435 *html/dot-svLen.html
e723529f63c953880e28eec0ee06e1d8 *html/dot-testfile.html
013a41b78ee3185a7086da4f8fb00898 *html/dot-testrecord.html
42fe7ff09cb52f2966de334ff33ce2e9 *html/dot-toVcfBreakendNotationAlt.html
42d7adbfa7417029d065561abe72abf9 *html/dot-unXStringSet.html
87f0d5ea1bc4d9a776454af3bcc307da *html/elementExtract.html
ff4906fe2def35019de5315571a172aa *html/extractBreakpointSequence.html
a5455236aa04ebac7025d4e1f2a8bfea *html/extractReferenceSequence.html
88bbf45036cf467a3cfff56d4cfa1495 *html/findBreakpointOverlaps.html
3f62e66d237536846056b113b8f7378f *html/grapes-na-grapes.html
891ae7454d51eb27cd37e0f59ae3ccf1 *html/grapes-null-grapes.html
1606949841cc31a4c8b3109d1184d80e *html/isStructural.html
f9d699c227360d0c246418d4ef35c6a9 *html/isSymbolic.html
fa4f7ff0a96d76d0d31e6d53c97a8700 *html/pairs2breakpointgr.html
09dc8c26d96ef3df3d925229a30bfe60 *html/partner.html
