plotGCbias {Starr} | R Documentation

## Visualize GC-Bias of Hybridization

### Description

Generates a plot showing the GC-bias of the hybridization.

### Usage

    plotGCbias(intensity, sequence, main="")

### Arguments

`intensity` | a vector of type numeric, containing the measured intensities.
`sequence` | a vector of type character, containing the sequences.
`main` | head of the plot

### Author(s)

Benedikt Zacher zacher@lmb.uni-muenchen.de

### See Also

`boxplot`

### Examples

    ##
    sequence <- unlist(lapply(1:50000, function(x) {paste(sample(c("A","T","C","G"),prob=c(0.3,0.3,0.2,0.2),25,replace=TRUE), collapse="")}))
    values <- runif(50000,min=-2,max=2)
    plotGCbias(values, sequence)

[Package Starr version 1.42.0 Index]