GE_matrix {StarBioTrek} | R Documentation

## Get human KEGG pathway data and a gene expression matrix in order to obtain a list with the gene expression for only pathways given in input .

### Description

GE_matrix creates a list of gene expression for pathways given by the user.

### Usage

    GE_matrix(DataMatrix, genes.by.pathway)

### Arguments

`DataMatrix` | gene expression matrix (eg.TCGA data)
`genes.by.pathway` | a list of pathway data as provided by GetData and ConvertedID_genes

### Value

a list for each pathway ( gene expression level belong to that pathway)

### Examples

    list_path_gene<-GE_matrix(DataMatrix=tumo[,1:2],genes.by.pathway=pathway[1:5])

[Package StarBioTrek version 1.12.0 Index]