8314d5a4ee489e90b35376783cd8b147 *DESCRIPTION
27b80f7f7185212dc706b536da0f13b5 *INDEX
a3d01ec3d45bbe1946d62ede45083427 *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
4af54e510ea807bcaa6e4d962fb9ebc8 *Meta/hsearch.rds
5304e996dcc7f3b26a39d8c0d3a4730f *Meta/links.rds
55edfcac8a7682744016751025c8c204 *Meta/nsInfo.rds
b17773721a7bb0f7bd64eeab5049fb6f *Meta/package.rds
8e18ccf43744f30bafeb8a08781f5f2c *Meta/vignette.rds
6feba8077718b0c668857b5d7b860d6d *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/SplicingGraphs
883d405f5039b0ddada8854a3a47403c *R/SplicingGraphs.rdb
8a73d831b2854a92ea826d9b8e07fff5 *R/SplicingGraphs.rdx
f01148e3708fdc4c6249dc3695b3f1d8 *doc/SplicingGraphs.R
8e772f322a2f2ae586804ae50e60e6bf *doc/SplicingGraphs.Rnw
dc091c1a311ab7b8bf6f8fdbbfbfceea *doc/SplicingGraphs.pdf
88377b5fd65dbaaf32cf912ac99e20ac *doc/index.html
e927d6e86c26ef2f567f538e4d02c6bb *extdata/ASpatterns.txt
b10a130d5d8e8aa34a67c0676e678e42 *extdata/TSPCsg.rda
2496dff4893d460511d871a0c485aa6b *extdata/toy_genes.gff3
648ca39416010bda3340da48c26912ef *extdata/toy_overlaps.txt
62072a44e72d0ea965e19a12820417ca *extdata/toy_reads.sam
ff355f3e1adcaa01590064536ff5380f *help/AnIndex
9962b16e92b02932a994049e560e8f6e *help/SplicingGraphs.rdb
0be0af24388201f08370bc5ac969d5e9 *help/SplicingGraphs.rdx
b135daaac91bff7366b1d56cc052ab06 *help/aliases.rds
5d8c0e99fb0f694925774c3dbf6f2f10 *help/paths.rds
8e54992fb8b7af50a86d95a55a75d39b *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
b4c08cac5d19e26256928de1da20259e *html/SplicingGraphs-class.html
dd1f54f9cec3ab093d1f5a7fd13ec5ca *html/SplicingGraphs-package.html
55aeb547a04cd86a08810f7c6d5a255c *html/TSPCsg.html
192ede45f303a2655a34ab14c5f7fb4f *html/assignReads.html
0d855552ce29e26cda8cf07739cfab97 *html/bubbles-methods.html
57033020dca43a6e9abc3dabe22e2ab1 *html/countReads-methods.html
ffc777652bf27a713aa105da7b11d2fc *html/plotTranscripts-methods.html
3c2212f540d1a989477907997268ef5a *html/rsgedgesByGene-methods.html
16adfb602ac6bd396f25dfb4922ca5de *html/sgedges-methods.html
fa28de373ddf6058c99bda6a8eb60abd *html/sgedgesByGene-methods.html
595d43996516841c06f4da4db79e46f4 *html/sgraph-methods.html
5e1a1dad19eed636aae23316b6df1c1f *html/toy_data.html
6d25548e7e44e52a78dee47bdb7e773d *html/txpath-methods.html
f22485f979fcbadb1e6d5c1498f2de11 *scripts/TSPC-utils.R
0ee9097358b000f70562de18bc67a066 *scripts/create-vignette-plots.R
44830c9a0141fe8277304d7419d7a20d *scripts/makeTSPCsg.R
1bba688669d20686db16f84dc56a8e2f *unitTests/test_countReads-methods.R
