writeSpeCondResult {SpeCond} | R Documentation

## Write in text files the main result of the SpeCond function

### Description

`writeSpeCondResult` produces three text files: - The table of the gene detected as specific and in which condition they are specific (0: no specific, 1: specific up-regulated, -1:specific down-regulated). The default name is file.name.profile="specific_profile.txt". - The list of the specific genes. The default name is: "list_specific_probeset.txt". - The table of the unique specific profiles detected. The default name is: "specific_unique_profile.txt".

### Usage

    writeSpeCondResult(L.specific.result, file.name.profile =
     "specific_profile.txt", file.specific.gene = "list_specific_gene.txt",
     file.name.unique.profile = "specific_unique_profile.txt")

### Arguments

`L.specific.result` | The `L.specific.result` list of the included in the result of the main `SpeCond` function: generalResult$specificResult$L.specific.result
`file.name.profile` | The name of the produced file containing the gene's profiles
`file.specific.gene` | The name of the produced file containing the list of the specific genes
`file.name.unique.profile` | The name of the produced file containing the unique gene's profiles

### Author(s)

Florence Cavalli, florence@ebi.ac.uk

### See Also

`SpeCond`, `getProfile`, `writeUniqueProfileSpecifcResult`, `writeGeneResult`

### Examples

    library(SpeCond)
    data(expressionSpeCondExample)
    ##Perform the condition specific detection analysis with SpeCond()
    generalResult=SpeCond(expressionSpeCondExample, param.detection=NULL,
     multitest.correction.method="BY", prefix.file="E", print.hist.pv=TRUE, fit1=NULL,
     fit2=NULL, specificOutlierStep1=NULL)
     specificResult=generalResult$specificResult

    ##write the SpeCond results files
     writeSpeCondResult(specificResult$L.specific.result,file.name.profile=
     "Example_specific_profile.txt", file.specific.gene="Example_list_specific_gene.txt",
      file.name.unique.profile="Example_specific_unique_profile.txt")

[Package SpeCond version 1.40.0 Index]