SeqSQC-package {SeqSQC} | R Documentation

## Sample Quality Check for NGS Data using SeqSQC package

### Description

SeqSQC

### Details

Sample Quality Check for NGS Data.

### Author(s)

Qian Liu

### See Also

`LoadVfile`
for data preparation;
`MissingRate`
`PCACheck`
`Inbreeding`
`IBDCheck`
`PCACheck`
for individual sample QC checks;
`problemList`
for the summary of problematic samples with reason and sample list to be removed;
`IBDRemove`
for the problematic sample pairs detected with cryptic relationship;
`RenderReport`
to generate the sample QC report;
`plotQC`
to generate the ggplot or interactive plots in html format for each individual QC check;
`sampleQC`
for wrapper of data preparation, all sample QC checks, QC result summary, and sample QC report.

[Package SeqSQC version 1.8.1 Index]