annotationRegions {SNPhood} | R Documentation

## Get the annotation of SNP regions for a SNPhood object.

### Description

Return the annotation of the SNP regions that are defined in the `SNPhood` object.

### Usage

    annotationRegions(SNPhood.o, asGRangesObj = FALSE, verbose = FALSE)

### Arguments

`SNPhood.o` | Object of class `SNPhood`
`asGRangesObj` | Logical(1). Default FALSE. Should the full annotation be returned (as `GRanges` object) or only the annotation of the SNP regions (as character vector)?
`verbose` | Logical(1). Default FALSE. Should the verbose mode (i.e., diagnostic messages during execution of the script) be enabled?

### Value

If `asGRangesObj` is set to `TRUE`, a `GRanges` object is returned. Otherwise, a character vector with the currently stored SNP annotation is returned.

### Examples

    data(SNPhood.o, package="SNPhood")
    IDs.vec = annotationRegions(SNPhood.o, asGRangesObj = FALSE)
    IDs.gr  = annotationRegions(SNPhood.o, asGRangesObj = TRUE)

[Package SNPhood version 1.16.0 Index]