plotTIC {SIMAT} | R Documentation

## Plotting TIC of one run

### Description

This function can be used to plot the total ion chromatogram (TIC) profile of a run, showing the accumulated measurements for all fragments versus time. The run can be optianed by `getPeak`.

### Usage

    plotTIC(Run = list(), file.name = character())

### Arguments

`Run` | a list inclduing the information of all detected peaks in one run.
`file.name` | a character vector (string) of names of the runs which is used to name the figure file when saving, if the `Run` is provided, this argument is ignored.

### Details

This function plots the TIC profile of one run. The run information can be obtained using `getPeak` finction. The TIC is the sum of the intensities from all masses at each scan. If argument `Run` is provided, the funtion plots the TIC for that run. If a list of file names is provided, the function saves a corresponding plot for each run with the related name.

### Value

A logical value which is TRUE if the resulted plot is saved

### Author(s)

Mo R. Nezami Ranjbar

### References

http://omics.georgetown.edu/SIMAT.html

### See Also

`plotEIC`

### Examples

        # load an RData file including a single run data acquired by readCDF
        data("Run")

        # plot TIC of the run
        plotTIC(Run = Run)

[Package SIMAT version 1.18.0 Index]