c3bde156c0761d9578badd79a0161031 *CITATION
4bf2dc7587ac3f3ada740575167c99b4 *DESCRIPTION
79c58e2ad89d35e1a68916a9d5ba0b79 *INDEX
e8485b23375b200bea1898f1678c2218 *Meta/Rd.rds
a4c10be75a391c215e135a14f72f46d0 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
921b39d656742745286ca2bd9981ea12 *Meta/hsearch.rds
67c1fb0befa5a8e4be77a03fee593616 *Meta/links.rds
3b8a345564ff1c7fe54279e240226842 *Meta/nsInfo.rds
971161c7eec855fc38ff25ba7e11699e *Meta/package.rds
625e79df107be3617262645833828834 *Meta/vignette.rds
c3b77cb7b773121dd3778f785becb898 *NAMESPACE
a0fddb94813c5ed2c6f607d24b436efd *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/SGSeq
c14700fc4831f0d741b76f7a15cb1810 *R/SGSeq.rdb
96deb28008772895592d6a1841b927cd *R/SGSeq.rdx
d674c87c4ccd5e766f7abeca7095d584 *data/Rdata.rdb
c29758575a53685c3895957e5fb5315f *data/Rdata.rds
aadce82922c5a44d27eb8a2a4c302b28 *data/Rdata.rdx
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26a827488ea280a0a53b9fdc2455f4e6 *doc/index.html
f635a290f6dd7bd6a571a748b9b4ce2d *extdata/bams/N1.bam
10e437ecd83a1648f6feb28efd666a3d *extdata/bams/N1.bam.bai
6ae387d023817532da8ab3273731c6b7 *extdata/bams/N2.bam
7bc7623be9eb5b52f7d272b1e54d7c1f *extdata/bams/N2.bam.bai
e07e5bf79859b2028cb402c079577316 *extdata/bams/N3.bam
20cd985ef7ffa218da184f187ce50dea *extdata/bams/N3.bam.bai
b0a8a2796e4cd67d1c5231481dc298f7 *extdata/bams/N4.bam
c14641aca82d7b303f9ab448ce5b4f2e *extdata/bams/N4.bam.bai
dab9dc6d74c1e618b960baa0148740af *extdata/bams/T1.bam
f1bd4bdf90f83ca520ab1fba63cea726 *extdata/bams/T1.bam.bai
6e43c101708a4040937e389b9888832b *extdata/bams/T2.bam
b48cfbe384de76d521dff37845bb811b *extdata/bams/T2.bam.bai
1751240dde82ab77847b18cc93ce4b31 *extdata/bams/T3.bam
b0c6a086071d7f7d5c5153cfc1778147 *extdata/bams/T3.bam.bai
0ed841f711101c6ed48133d5cf35c9df *extdata/bams/T4.bam
33e452914d0a92a7287b5902f7a223d3 *extdata/bams/T4.bam.bai
7d31b555fc3a0ef493db24637a69d7b5 *help/AnIndex
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ffa1f56d4cf23043ad4fd5096fc85390 *help/SGSeq.rdx
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b923f2ef96f5a6df7878b9548a4e88df *help/paths.rds
608c9654a9c8f50fe0681f4eb1e4b3b6 *html/00Index.html
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7465ae9fa1180dd142ae39ae7568d983 *html/TxFeatures.html
15f36151c0e6b4c0a2f5157ae3a0dfb6 *html/analyzeFeatures.html
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0e1d5b6a4dfb5a39ffe661e5d98402b3 *html/exportFeatures.html
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a291c15d410971963e009376b77330e2 *html/findOverlapsRanges.html
ee21c3d54a9a7ee27d2a6da5d4286904 *html/findSGVariants.html
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473e9a74942363287764d30ac7320063 *html/getSGFeatureCountsPerSample.html
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82ee8e9915dab00fba4367bf770fd9b5 *html/gr.html
0055e5475980f70e582221d851ad379e *html/importTranscripts.html
bd627659a1fc5d126481e05996324130 *html/junctionCompatible.html
509c75bfd93478adba0859137001cc98 *html/makeSGFeatureCounts.html
85e3118728362fee7707e42b9e5ec501 *html/makeVariantNames.html
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9da8f3becc5891004c228067b8e45b0a *html/predictCandidatesInternal.html
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9cef85fa9c57f7bf0005e154a853fbe5 *html/predictSpliced.html
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30d8678d98b7cd9d5ce1b890f0f5ba18 *html/predictVariantEffects.html
62697f7e04b96a6d538a8b1e0ad297ed *html/processTerminalExons.html
a4efbc20c056182edaa1670ddf2bd529 *html/removeExonsIsolated.html
9a0ae52b02bd2b9508b95e69e94e6e9c *html/sgf_ann.html
0db140ce847aaa14b532849f7d5acacf *html/sgf_pred.html
c1b6074512ad60c5b3220a34eba17a3f *html/sgfc_ann.html
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25ddf6188a7b8af6896065d58554a592 *html/sgv_ann.html
4b58262aa36be3ccae6de7eb42c05a28 *html/sgv_pred.html
244c96c2a8075ac36b28fbd806962a18 *html/sgvc_ann.html
37ba624f28a77405505e37f4036217fb *html/sgvc_ann_from_bam.html
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d6022eeabc2baf6cb60b101cadd30184 *html/si.html
8fa87e2892ab11f20556d540afcd5aab *html/slots.html
17348724b75eca99f5ec92e8aca07274 *html/splicesiteOverlap.html
90e80d47a3f0bb3571be33063fca555a *html/tx.html
22252b3af9f8485e49c2a517c0e067f1 *html/txf_ann.html
84ab3e43029b07c6d387e9b4671e7d67 *html/txf_pred.html
983b584429f82645ac41b46ce1ebf900 *html/updateObject.html
916134d923047d0d83dd3cac336afac2 *scripts/createExampleData.R
62e6eb32b9d91e2d2e22f8a0ebe3999b *unitTests/test_analyzeFeatures.R
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1a72ecb53227d3f1a1b3ea90297e911f *unitTests/test_annotate.R
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82ac16fa44fac098647f31ac89dfa696 *unitTests/test_mergeTxFeatures.R
9212fb3c627df1a8f0db8e52fa7b5da2 *unitTests/test_predictTxFeatures.R
75201f127c6a3884632ed88c88714ee0 *unitTests/test_predictVariantEffects.R
