predictCandidatesInternal {SGSeq} | R Documentation

## Identify candidate internal exons

### Description

Identify candidate internal exons based on previously identified splice sites and regions with sufficient read coverage.

### Usage

    predictCandidatesInternal(islands, splicesites, frag_coverage, relCov)

### Arguments

`islands` | `IRanges` of genomic regions with minimal read coverage required for internal exon prediction
`splicesites` | `IRanges` of splice sites with metadata columns “type” and “N”
`frag_coverage` | `Rle` object with fragment coverage
`relCov` | Minimum relative coverage required for exon prediction

### Value

`IRanges` of candidate internal exons

### Author(s)

Leonard Goldstein

[Package SGSeq version 1.20.0 Index]