SGVariantCounts {SGSeq} | R Documentation

## Splice graph variant counts

### Description

Creates an instance of S4 class `SGVariantCounts` for storing splice variant counts.

### Usage

    SGVariantCounts(x)

### Arguments

`x` | `RangedSummarizedExperiment` with `SGVariants` as `rowRanges` and assays “variantFreq”, “countsVariant5p”, “countsVariant3p”, “countsEvent5p”, “countsEvent3p”, and optionally “countsVariant5pOr3p”

### Value

`SGVariantCounts` object

### Author(s)

Leonard Goldstein

### Examples

    sgvc <- SGVariantCounts()

[Package SGSeq version 1.20.0 Index]