+.SBGNview              Generic function to modify SBGN graph features
SBGNview                Overlay omics data on SBGN pathway diagram and
                        output image files.
SBGNview.obj            Demo SBGNview object
arc-class               An object to store arc information.
changeDataId            Change the data IDs of input omics data
changeIds               Change input IDs to another ID type
downloadSbgnFile        Download pre-generated SBGN-ML file from GitHub
findPathways            Retrieve pathways from keywords
getMolList              Retrieve gene list or compound list from
                        collected databases
glyph-class             An object to store glyph information
highlightArcs           Highlight arcs by arc class
highlightNodes          Highlight input nodes
highlightPath           Given two nodes, find the shortest path between
                        them and highlight the path. Other
                        molecules/nodes and edges involved in reactions
                        in the path are also highlighted.
loadMappingTable        Generate ID mapping table from input and output
                        ID types. If provided a vector of input IDs
                        (limit.to.ids argument), the function will
                        output mapping table only containing the input
                        IDs. Otherwise, the function will output all
                        IDs of input and output types (restricted to a
                        species if working on gene types and specified
                        the "species" parameter).
mapped.ids              IDs mappable by SBGNview
outputFile              Retrieve output file information from a
                        SBGNview object
outputFile<-            Set output file information for a SBGNview
                        object
pathways.info           Information of collected pathways
pathways.stat           Number of pathways collected
print.SBGNview          A wrapper to run function 'renderSbgn' for all
                        pathways in a SBGNview object and generate
                        image files.
renderSbgn              Overlay omics data on a SBGN pathway graph and
                        output image files.
sbgnNodes               Extract glyph information
spline.arc-class        An object to store information for spline
                        formated arcs.
