get.cpg.stats {RnBeads} | R Documentation

## get.cpg.stats

### Description

Computes CpG-related statistics for the specified regions.

### Usage

    get.cpg.stats(chrom.sequence, starts, ends)

### Arguments

`chrom.sequence` | Chromosome sequence, usually obtained from the assembly's genome definition. This must be an object of type `MaskedDNAString`.
`starts` | `integer` vector of start positions for the regions of interest.
`ends` | `integer` vector of end positions for the regions of interest.

### Value

Table of statistics for the regions in the form of a `matrix` with the following columns: `"CpG"` and `"GC"`. The columns contain the number of CpG dinucleoties and the number of C and G bases in each region.

### Author(s)

Yassen Assenov

[Package RnBeads version 2.4.0 Index]